PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001176-PA
Common NameOsI_02926
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 144aa    MW: 15068.8 Da    PI: 4.088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001176-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY22.72e-072313059
                      TT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY 30 agCpvkkkversaedpkvveitYegeHnhe 59
                      +gC+++k vers   p ++++tY  eH h+
  BGIOSGA001176-PA  2 KGCMARKMVERSPAKPGMLVVTYMAEHCHP 31
                      68**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007740.0065132IPR003657WRKY domain
PROSITE profilePS5081112.782133IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-7233IPR003657WRKY domain
PfamPF031062.4E-5231IPR003657WRKY domain
SuperFamilySSF1182903.4E-7233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MKGCMARKMV ERSPAKPGML VVTYMAEHCH PVPTQLNALA GTTRHKSAPT GDDDKPTSPG  60
PAAGRAAAGE GVVKCEDVDG NELSAMAADG GAEDTAAAAD DDGELWPEGM GLELDEFLGP  120
MDDDVFEFDH VLEDDGVLGR RLSL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329966250.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114160.0AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAP0027440.0AP002744.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0006C01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY8706010.0AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640600.16e-99WRKY transcription factor 22
TrEMBLB8ABZ67e-99B8ABZ6_ORYSI; Uncharacterized protein
TrEMBLB9EY501e-97B9EY50_ORYSJ; Uncharacterized protein
TrEMBLI1NPU01e-97I1NPU0_ORYGL; Uncharacterized protein
TrEMBLQ5ZEB21e-97Q5ZEB2_ORYSJ; DNA-binding protein WRKY3-like
TrEMBLQ6IER93e-97Q6IER9_ORYSJ; WRKY transcription factor 12
STRINGOS01T0624700-012e-98(Oryza sativa)
STRINGORGLA01G0188000.12e-98(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-16WRKY DNA-binding protein 27