PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001178-PA
Common NameOsI_02922
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 359aa    MW: 38127.8 Da    PI: 5.894
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001178-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY857.2e-27188246259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p ++++tY  eH h+
  BGIOSGA001178-PA 188 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMAEHCHP 246
                       799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.377182248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-27183248IPR003657WRKY domain
SuperFamilySSF1182901.29E-24185248IPR003657WRKY domain
SMARTSM007741.6E-32187247IPR003657WRKY domain
PfamPF031061.2E-22189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEHFNDWDLQ AVVRSCSFPQ SEPPRVGVGV PAAPGAGGAP VVVAPPARAP DGPDQMARAS  60
ASALYDLEYL DLDHKPFLLP GSSSSSSSSR AVARARGEDD GKGRHEVMIS FPAAAAASTS  120
GAQPRSPSGR KPGIRTPRPK RSLIAPRKFS AYFEVIDYCD FHGVRSSKKS QLKKVVYEVP  180
VADGGVSSDL WAWRKYGQKP IKGSPYPRGY YKCSSMKGCM ARKMVERSPA KPGMLVVTYM  240
AEHCHPVPTQ LNALAGTTRH KSAPTGDDDK PTSPGPAAGR AAAGEGVVKC EDVDGNELSA  300
MAADGGAEDT AAAVDDDGEL WPEGMGLELD EFLGPMDDDV FEFDHVLEDD GVLGRRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-20169249280Disease resistance protein RRS1
5w3x_D1e-20169249280Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329966250.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769240.0AY676924.1 Oryza sativa (indica cultivar-group) transcription factor WRKY03 (WRKY03) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640600.10.0WRKY transcription factor 22
TrEMBLB8ABY70.0B8ABY7_ORYSI; Uncharacterized protein
STRINGONIVA01G26290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-37WRKY family protein