PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001204-PA
Common NameOsI_02867
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 463aa    MW: 50385.3 Da    PI: 7.5813
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001204-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.4e-11109134227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C f++ t tCk+G++CkF H++
  BGIOSGA001204-PA 109 GEKDCAFYMMTRTCKFGGSCKFDHPQ 134
                       7889********************97 PP
2zf-CCCH40.54.4e-13159184227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C+ff++tG Ck+G++CkF+H++
  BGIOSGA001204-PA 159 GEPDCPFFMKTGKCKFGSKCKFNHPK 184
                       789*********************96 PP
3zf-CCCH31.14e-10213237327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++lC+f+a+tG Ck+ + CkF+H++
  BGIOSGA001204-PA 213 EPLCSFYAKTGKCKFRAMCKFNHPK 237
                       79*********************96 PP
4zf-CCCH39.87.4e-13290315126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C+f++++G Ck+G++C+F+H+
  BGIOSGA001204-PA 290 PGEVDCPFYMKMGSCKFGSTCRFNHP 315
                       57899********************9 PP
5zf-CCCH36.11.1e-11373394526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C+f+++tG+Ck+ drCkF+H+
  BGIOSGA001204-PA 373 VCDFYMKTGFCKFADRCKFHHP 394
                       7********************8 PP
6zf-CCCH33.85.6e-11428450527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        C f+++tG Ck+G +CkF H+p
  BGIOSGA001204-PA 428 VCAFYMKTGVCKFGMQCKFDHPP 450
                       7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.615107135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5108134IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8109134IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6157184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258157185IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10159184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6162187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5163184IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-5210237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267210238IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6213237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4215236IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7289316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601289317IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10291315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5293316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4295314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-7367396IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7368395IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859368396IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8372394IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-6373394IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5423450IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408423451IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5426451IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8427450IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4428448IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSDPFYPHGH GGAAGGEGAA AAAAGYSSYE VDLIAARYGG RPLANPSSAA ADLDARLAGA  60
RRSMGVLYHQ PIMGSHSTVE QIEALYSSNT MTKRPRLESS LPIYPQRPGE KDCAFYMMTR  120
TCKFGGSCKF DHPQWVPEGG IPNWKEAANV EESYPEQQGE PDCPFFMKTG KCKFGSKCKF  180
NHPKEKVNAL ASGKTNDKHL IADSSILPVR PSEPLCSFYA KTGKCKFRAM CKFNHPKDIE  240
IPSSQNEPES AVTVEGETDI GSAADSVSAK MQTPVAAAQE FNSKGLPMRP GEVDCPFYMK  300
MGSCKFGSTC RFNHPDRLVL NFPLPLGQTI LPTPESMLLN SSANFMQGFD FHAAHMPVGP  360
GPVTYPQRPG ATVCDFYMKT GFCKFADRCK FHHPIDRSAP DPSANWEPAE ESVQLTLAGL  420
PRREDAVVCA FYMKTGVCKF GMQCKFDHPP PQEAIAKVSN SGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.14860.0callus| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887790.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1121160.0AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622283.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLB8ABV90.0B8ABV9_ORYSI; Uncharacterized protein
STRINGORGLA01G0182800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-142floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]