PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001354-PA
Common NameOsI_02549
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YB
Protein Properties Length: 68aa    MW: 7825.14 Da    PI: 4.5339
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001354-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB52.51.2e-163651576
             NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwala.tlGf 76
                      +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al   l f
  BGIOSGA001354-PA  3 KIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQlCLSF 65
                      89****************************************************999623555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.48E-20260IPR009072Histone-fold
PfamPF008081.7E-18359IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.1E-22360IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE VCSREDKKTI APEHVLRALQ  60
LCLSFPEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-203682386Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.156173e-98callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184816193e-98
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4649027e-96AF464902.1 Oryza sativa repressor protein (Dr1) mRNA, complete cds.
GenBankCT8301307e-96CT830130.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058B22, full insert sequence.
GenBankCT8415647e-96CT841564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020259356.11e-36protein Dr1 homolog
RefseqXP_020259357.11e-36protein Dr1 homolog
SwissprotP495927e-35NC2B_ARATH; Protein Dr1 homolog
TrEMBLB8AAQ31e-41B8AAQ3_ORYSI; Uncharacterized protein
STRINGOMERI08G11030.12e-35(Oryza meridionalis)
STRINGOPUNC08G12020.11e-35(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.43e-37nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]