PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001371-PA
Common NameOsI_02506
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 148aa    MW: 15865.9 Da    PI: 4.9953
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001371-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.96.8e-3322121199
            DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +CaaCk+lrr+C+++ C lap+fpa+qp++++ v+++FG+++vl+l +++ +e  +d++ss+vyeAea+ rdPv G +gv+ +l+ ++ +++a
  BGIOSGA001371-PA  22 RCAACKFLRRACSPEeCRLAPHFPASQPERLQSVERVFGMRKVLELAHKAGPEYLDDILSSIVYEAEAWGRDPVWGPTGVVGALELEIGTARA 114
                       6***********9877***************************************************************************** PP

            DUF260  93 elallke 99 
                       +la+l+ 
  BGIOSGA001371-PA 115 DLAVLQG 121
                       **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.82321123IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-2822120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MADPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVERVFG  60
MRKVLELAHK AGPEYLDDIL SSIVYEAEAW GRDPVWGPTG VVGALELEIG TARADLAVLQ  120
GQDQDQPPAV ATLPEPELPR PPADDGAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-202311612104LOB family transfactor Ramosa2.1
5ly0_B6e-202311612104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638289.13e-93uncharacterized protein LOC107278430
RefseqXP_025882396.13e-93uncharacterized protein LOC107278430
TrEMBLA2WRM21e-102A2WRM2_ORYSI; Uncharacterized protein
STRINGORGLA01G0166300.19e-93(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158291113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.19e-23ASYMMETRIC LEAVES 2-like 1