PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001389-PA
Common NameOsI_02477
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 481aa    MW: 48866.7 Da    PI: 5.1585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001389-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07375415954
                       HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  BGIOSGA001389-PA 375 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 415
                       69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-11372420No hitNo description
SuperFamilySSF474593.66E-13372426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-11374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-5375415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MFRSAVAVSQ LATTTVWMDR GFNEMILSES VWNGGGGGGG GDGDGGAVVL PPEVGGVNAV  60
DGSGMTMLER LVLDEALAAA ILELQGIQAP GCGGGGCKVA VVPPPTAGDG GVEAAVAFAA  120
MATGTPAYAD VDADVLQRQR QHHHRHQGAM GMAAEYDVAP ATPAVTLSAV SPPPPPPAFA  180
TAAASVDGGG AMDATVFSGI GNDDVVDAVS ATVAMTTSQC ERVRGGGGGG GCGRKQRRPG  240
RKRKASEPTA AAAAADMSSQ DNPLCSLLAS NTAGADGGIQ IAFSTSAPAS KRAKPSLSSS  300
SSSISFDGRG PGGNCGGGGD DDPLYEPDTE ALAQVKEMIY RAAAMRPVTL GAEDAGERPR  360
RRNVRISSDP QTVAARQRRE RISERLRVLQ KLVPGGAKMD TASMLDEAAN YLRFLKSQIR  420
ELQTLDRRNY PNAAMSINTA AATTMATSSS PTYNNSNAAM PAFAFPETLG CGGGGGVEQL  480
I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375380RQRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.212310.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975970390.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629736.10.0transcription factor LATE FLOWERING-like
RefseqXP_015629741.10.0transcription factor LATE FLOWERING-like
TrEMBLA2WRJ20.0A2WRJ2_ORYSI; Uncharacterized protein
STRINGONIVA01G07440.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-34bHLH family protein