PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001546-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 243aa    MW: 25786 Da    PI: 9.7945
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001546-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.72.8e-314106198
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+q +
  BGIOSGA001546-PA   4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGQWQAC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallk 98 
                       q+++e++l +
  BGIOSGA001546-PA  97 QAAVEAVLKG 106
                       ****998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.533109IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAGPDH  60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GQWQACQAAV EAVLKGDPVV QVSSEAAAAA  120
QATPPLRAYD IRHVAKDAEA DAAANLLRVA RGGRTRFKRA SSSSNSKHGA KLAGAAAAKR  180
AASPSSSSPT HETEPXXXXX XXXXXXXXXX XXXSSSSVGL GSVPSCLHPV CPQPPRQEIG  240
HTY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.225770.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166325460.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628244.11e-138LOB domain-containing protein 40
SwissprotQ9M8861e-80LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0E0FM491e-137A0A0E0FM49_ORYNI; Uncharacterized protein
STRINGONIVA01G19320.11e-138(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-66LOB domain-containing protein 41