PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001959-PA
Common NameOsI_01247
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 324aa    MW: 34385.8 Da    PI: 8.2356
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001959-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.7e-12328227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      ++++C+++++tG+Ck+G +CkF+H++
  BGIOSGA001959-PA  3 GEKECSYYMKTGQCKFGTTCKFHHPE 28
                      6789********************96 PP
2zf-CCCH391.4e-12156182127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C++++rtG Ck+G++Ck++H++
  BGIOSGA001959-PA 156 PGQPDCQYYMRTGDCKFGATCKYHHPR 182
                       5789*********************96 PP
3zf-CCCH32.61.3e-10205228427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        +C ++a++G+C+yG  Ck+ H++
  BGIOSGA001959-PA 205 QPCAYYAQNGYCRYGVACKYDHPM 228
                       69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-5128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835129IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-10328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6528IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4727IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497155183IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6155182IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10157182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5160183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5161184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892201229IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6201228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6202231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5205226IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8205228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MQGEKECSYY MKTGQCKFGT TCKFHHPEFG GVPMNPGIYP PLQSPSIASP HPYASLANWQ  60
MGRPPVVPGS YIPGSYTPMM LSSGMIPLQG WSPYPASVNP VVSGGAQQNV QAGPVYGMGH  120
HGSSSTIAYG GPYVPYASST GQSSNNQQEH GFPERPGQPD CQYYMRTGDC KFGATCKYHH  180
PRELSAPKSG YMVNSLCLPL RPGAQPCAYY AQNGYCRYGV ACKYDHPMGT LGYSPSALPL  240
SDMPIAPYPI GFSIATLAPS SPSPDLRPEY ISTKDQSVNQ VTSPVAASEP VGSILPKGVF  300
PADTMMRAQT NTTSGGSSSP GGGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.99310.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379882960.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116330.0AK111633.1 Oryza sativa Japonica Group cDNA clone:J013116H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651248.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA2WN230.0A2WN23_ORYSI; Uncharacterized protein
STRINGOMERI01G09890.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-78C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]