PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002040-PA
Common NameOsI_01087
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 384aa    MW: 40017.2 Da    PI: 4.9535
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002040-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.61.6e-24213265154
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                       k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQ  R
  BGIOSGA002040-PA 213 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQAAR 265
                       5689*****************.*****************************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.386210269IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-22211265IPR009057Homeodomain-like
SuperFamilySSF466894.84E-15211266IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23213265IPR006447Myb domain, plants
PfamPF002496.0E-6216262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP PSPADIADEV DAFIVDDSCL LEYIDFSCCD  60
VPFFHADDGD ILPDLEVDPT ELLAEFASSP DDEPPPTTSA PGPGEPAAAA GAKEDVKEDG  120
AAAAAAAADY DGSPPPPRGK KKKDDEERSS SLPEEKDAKN GGGDEVLSAV TTEDSSAGAA  180
KSCSPSAEGH SKRKPSSSSS SAAAGKNSHG KRKVKVDWTP ELHRRFVQAV EQLGIDKAVP  240
SRILELMGIE CLTRHNIASH LQAARKWGPQ AVTPGTPCMP PPLPPAAMLQ RFPVPPVPGM  300
VPHPMYRPIP PPSPPQGNKL AALQLQLDAH PSKESIDAAI GDVLVKPWLP LPLGLKPPSL  360
DSVMSELHKQ GIPKVPPAAS GAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143RGKKKKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.12290.0flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379906420.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8340430.0CT834043.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI203A14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615905.11e-149probable transcription factor GLK2 isoform X1
SwissprotQ5NAN51e-150GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA2WMM00.0A2WMM0_ORYSI; Uncharacterized protein
STRINGORGLA01G0079000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-29GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]