PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002147-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 195aa    MW: 22143.9 Da    PI: 9.1071
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002147-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-153381348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                      +WT+eEd  l ++ + +G ++W+++a++m+    +R++kqc++rw+++l
  BGIOSGA002147-PA 33 AWTPEEDACLERLARGYGFRHWRRVAEEMQpreRRRSPKQCRDRWRDHL 81
                      8*********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.1942685IPR017930Myb domain
SMARTSM007176.4E-123083IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-173389IPR009057Homeodomain-like
PfamPF002492.0E-143381IPR001005SANT/Myb domain
CDDcd001676.31E-123381No hitNo description
SuperFamilySSF466891.01E-1733104IPR009057Homeodomain-like
PROSITE profilePS500906.57482134IPR017877Myb-like domain
SMARTSM007179.786136IPR001005SANT/Myb domain
SuperFamilySSF466893.89E-588144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-690135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
METSSSDFSS TTEVAATPSS AMRIILRIRL SPAWTPEEDA CLERLARGYG FRHWRRVAEE  60
MQPRERRRSP KQCRDRWRDH LARDVYHRPF TADDDAELAH LRLRGGGGDR WKDISRAAHC  120
RTSRAMRRRW RELRKSDAFL RALYWHPDQP VPPLLDDALS CSDVLDSSVA SYRGGCDAVA  180
GGGTIVAPGF ACFAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020920.0AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09.
GenBankAP0020930.0AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636830.11e-102transcription factor MYB3R-5
TrEMBLA0A0E0MSZ11e-138A0A0E0MSZ1_ORYRU; Uncharacterized protein
STRINGORUFI01G07580.11e-139(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-16myb domain protein r1