PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002237-PA
Common NameOsI_00691
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 215aa    MW: 22395.9 Da    PI: 7.5561
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002237-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.8e-30102160159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYG+K vk+s++pr+YYrC+ agC vkk+ver+ +dp++v++tY g Hnh 
  BGIOSGA002237-PA 102 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAAGCGVKKRVERDGDDPRYVVTTYDGVHNHA 160
                       59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-3189162IPR003657WRKY domain
SuperFamilySSF1182903.66E-2794162IPR003657WRKY domain
PROSITE profilePS5081131.08997162IPR003657WRKY domain
SMARTSM007741.3E-33102161IPR003657WRKY domain
PfamPF031061.8E-23103159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAASLGLCHE TSYAYSYPAS NTSSSLCFPP LMADHIVDGG CSFGEFLELG HSVYSLPLPP  60
PPSQPVVVAG GNNDQYGVSS SSAAAATTSR IGFRTRSEVE VLDDGFKWRK YGKKAVKSSP  120
NPRNYYRCSA AGCGVKKRVE RDGDDPRYVV TTYDGVHNHA TPGCVGGGGH LPYPTSAAPP  180
WSVPAAAASP PPAHAQAWGA PLHAAAAAHS SESSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2692162777Probable WRKY transcription factor 4
2lex_A1e-2692162777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.299790.0leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO335191950.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8312870.0CT831287.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI020N10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633261.11e-110probable WRKY transcription factor 50
TrEMBLA2WLH91e-154A2WLH9_ORYSI; Uncharacterized protein
STRINGOGLUM01G06090.11e-113(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.15e-38WRKY DNA-binding protein 50