PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002271-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family BES1
Protein Properties Length: 176aa    MW: 19172.9 Da    PI: 7.6744
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002271-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822145.25.7e-45531652112
            DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 
                       +s r+pt++ErEnn++RERrRR++a++iyaGLRa ++y+lpk+aD+n+Vl+ALc+eAG++v+dDG++ r+++++l  + + +g s+++ + ss
  BGIOSGA002271-PA  53 TSLRHPTARERENNRQRERRRRQVATRIYAGLRAGAGYALPKHADQNDVLRALCAEAGYLVDDDGNVSRRHDERLaGAGAGGGGSSDQLQVSS 145
                       789************************************************************************999999************ PP

            DUF822  94 lq.sslkssalaspvesysa 112
                       ++  +  + a++ + ++++ 
  BGIOSGA002271-PA 146 YSgATEAAVAIQHQEQEQEI 165
                       **777777777777666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.1E-3055156IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDQVVASGRE EAGGEAAAAM AXXXXXXXXX XXXXXXXXPW TVRRRGRAGG VTTSLRHPTA  60
RERENNRQRE RRRRQVATRI YAGLRAGAGY ALPKHADQND VLRALCAEAG YLVDDDGNVS  120
RRHDERLAGA GAGGGGSSDQ LQVSSYSGAT EAAVAIQHQE QEQEISLELT LSFTYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A4e-1356133372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B4e-1356133372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C4e-1356133372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D4e-1356133372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-164CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879038.12e-67BES1/BZR1 homolog protein 4-like
TrEMBLA0A0D3EK927e-94A0A0D3EK92_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FH247e-94A0A0E0FH24_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MS397e-94A0A0E0MS39_ORYRU; Uncharacterized protein
TrEMBLQ5VRV97e-94Q5VRV9_ORYSJ; Uncharacterized protein P0013F10.20
STRINGORUFI01G05260.11e-94(Oryza rufipogon)
STRINGONIVA01G05630.11e-94(Oryza nivara)
STRINGOBART01G05000.11e-94(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132013032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.61e-08BES1 family protein