PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002307-PA
Common NameOsI_00564
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 243aa    MW: 26043.4 Da    PI: 5.3765
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002307-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.5e-135089445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                       +  E e ++ + k+lG++ W+ Ia++m+ gRt++++k++w+
  BGIOSGA002307-PA 50 ISDREAETIISLQKLLGNR-WSVIAAKMP-GRTDNEIKNYWN 89
                      577899*************.*********.***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.6941IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.3E-62340IPR009057Homeodomain-like
SuperFamilySSF466893.94E-192797IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-224195IPR009057Homeodomain-like
PROSITE profilePS5129420.5524296IPR017930Myb domain
SMARTSM007173.8E-124694IPR001005SANT/Myb domain
CDDcd001674.78E-94989No hitNo description
PfamPF002498.2E-115190IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLIARQVIWF LDLTRLALHS FHCAGLRRSG KSCRLRWMNY LRPDLKKEPI SDREAETIIS  60
LQKLLGNRWS VIAAKMPGRT DNEIKNYWNS RIRKRQSAAA GAKGEPAPAT VMEKEPTANA  120
ATVAAAPEAA SPPPPPIPAR LPMFSCQLLD GGGSGGATAT TQSPPNAGSS DVSEVSACGG  180
NGGGEDSSRD YCFSGGDVDG DGDMVHLLAL DDLDLLVDVP GLLDVDAWDC ELYRADYSTS  240
RAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-18229536107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645714.11e-159myb-related protein Hv33
TrEMBLA2WL501e-177A2WL50_ORYSI; Uncharacterized protein
STRINGORUFI01G04650.11e-177(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP87032545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.13e-31myb domain protein 42