PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002600-PA
Common NameOsI_00047
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 387aa    MW: 41533.8 Da    PI: 8.4981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002600-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.46.9e-052743121255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  BGIOSGA002600-PA 274 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 312
                       7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.528262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-5272316No hitNo description
SuperFamilySSF474595.1E-11272324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-9276319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MASSSSSSSL CDNHLLQDDL IPWPSMPFAP APNTFGLNHQ WSQPPMLSSS TDQLSSYELE  60
SLQSVESQLA AAAPPTLSPH LQAHQLSTVL MMQELGFQWS SCAAPADQHS IASSTNNNSN  120
VMMNEEELRP RPDQSLISNP RSCSATTLLP PPHLHLDGAV LPSINVSRLQ KLAAGDEPPQ  180
ICCKRQAAAA AVVGHSSIRD EHVPCPYAGP PAHLIQGPSN TLQMKRNTNA AAQGRGGRHG  240
SSTEHRSSTA LPPSSKKPRL DSHSSSMLPS FKVRKEKLGD RIAALQQLVS PFGKTDTASV  300
LMEAIGYIKF LQDQVETLSG PYLRSSKNSK KLACRAAQQQ RKGTSNGGDA AAKLDLRSRG  360
LCLVPLSCTS YVTNENGVWP PPNFRGN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.458590.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379891160.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194930.0AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627200.10.0uncharacterized protein LOC4326301
TrEMBLB8ACT10.0B8ACT1_ORYSI; Uncharacterized protein
STRINGONIVA01G00330.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-45bHLH family protein