PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002619-PA
Common NameOsI_00080
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 155aa    MW: 16250.3 Da    PI: 10.516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002619-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-0940108455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...................TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.as................kapskKlsKaeiLekAveYIksLq 55 
                         + +E++RR +++    +L +l+P  a+                + +++ ++  + Le+A  YIk+L+
  BGIOSGA002619-PA  40 ERKDVEKNRRLHMKGLCLKLSSLIPAaAPrrhhhhystsssssppSSTKEAVTQLDHLEQAAAYIKQLK 108
                       56899*********************555**************76666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.52836107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1138121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-938120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-640107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003242113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MKSRKNSTTS TKAAGSCHTS SSGGGGGGGN CYSSSSSKME RKDVEKNRRL HMKGLCLKLS  60
SLIPAAAPRR HHHHYSTSSS SSPPSSTKEA VTQLDHLEQA AAYIKQLKGR IDELKKRKQQ  120
AAALTTSTSN GGGGGMPVVE VRCQDGTLDV VVPAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.300440.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166363970.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347290.0CT834729.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622948.11e-107transcription factor bHLH168
TrEMBLB8ACU91e-108B8ACU9_ORYSI; Uncharacterized protein
STRINGONIVA01G00560.11e-106(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-06bHLH family protein