PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002691-PA
Common NameOsI_00224
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 536aa    MW: 58047.6 Da    PI: 6.5095
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002691-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.2e-17388431146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++++eEdell++++++lG++ W++Ia +++ gRt+k++ ++w++
  BGIOSGA002691-PA 388 RRSFSEEEDELLLKLHALLGNR-WSLIAGRLP-GRTDKEVMNHWNS 431
                       6789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF118051.3E-13845361IPR021763Protein of unknown function DUF3326
PROSITE profilePS5129422.668383437IPR017930Myb domain
SMARTSM007171.7E-15387435IPR001005SANT/Myb domain
SuperFamilySSF466895.77E-14388447IPR009057Homeodomain-like
PfamPF002492.8E-15388431IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-20390433IPR009057Homeodomain-like
CDDcd001671.77E-5408433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MALHLTRPFL RPSPPPPRPT RRSSRAHCLA PSASARGPSF RRPYTSVLVV PTGVGAAVGG  60
FAGDALPVAR ALGAVADCVI SHPNVLNAAM LYWPMPNTLY VEGYALDRFA EGSWALQPVH  120
QNKVGLVLDS GIEEELRLRH LQVADAARAS LGLPVVEYIV TDTPLEIKTW FDPKCGKSTG  180
SVGNSDSLLR AVEALVNRSD VNAVAVVARF PDDDPEDSDC YREGKGVDLL AGVEAIISHL  240
IVKKFKIPAA HAPAVLPPVL SLSVSPRSAA EEIGHTFLPC VLAGLSNAPQ YVMRRNGNMD  300
NGCIVASDVD SVILPKDACG GDGTIAFART ATKNKPLIIT VQENETVLDD TPDKFNIEAV  360
SSQPPPRLIS EHLPAGDPPS PLSRSRKRRS FSEEEDELLL KLHALLGNRW SLIAGRLPGR  420
TDKEVMNHWN SKLMDSTIEH PPSLHDDEHR RRRRRLRSEA HDERGAKHPG HNSSSSSKDV  480
NGDECTVADD ASSCNHQDDN RAVAELNLEL TLSTPCIYLL LGQDREDGSK SNQGLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384389SRKRRS
2449456RRRRRRLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.757860.0callus| leaf| panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028600.0AP002860.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0409B08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878284.10.0uncharacterized protein LOC4325987
SwissprotP084521e-104Y1174_SYNP6; Uncharacterized lipoprotein syc1174_c
TrEMBLB8AD180.0B8AD18_ORYSI; Uncharacterized protein
STRINGONIVA01G01950.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1077288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-09MYB family protein