PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002747-PA
Common NameOsI_00326
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family RAV
Protein Properties Length: 316aa    MW: 35251.4 Da    PI: 7.6994
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002747-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.3e-1364112155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  BGIOSGA002747-PA  64 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRFRG 112
                       78****9888.8*********......44*************************98 PP
2B391.27.8e-29177270185
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk+ ae+h         +    +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F++
  BGIOSGA002747-PA 177 FEKAVTPSDVGKLNRLVVPKQQAERHfpfplrrhsSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSR 269
                       89*****************************999855667999************************************************96 PP

                       - CS
                B3  85 d 85 
                       +
  BGIOSGA002747-PA 270 S 270
                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.66E-1364118No hitNo description
SuperFamilySSF541715.56E-1664118IPR016177DNA-binding domain
PfamPF008472.7E-864112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-1965118IPR001471AP2/ERF domain
SMARTSM003809.2E-2465126IPR001471AP2/ERF domain
PROSITE profilePS5103221.07465120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.3E-38173292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-29174287IPR015300DNA-binding pseudobarrel domain
CDDcd100174.36E-28175270No hitNo description
SMARTSM010197.1E-20177287IPR003340B3 DNA binding domain
PROSITE profilePS5086313.394177286IPR003340B3 DNA binding domain
PfamPF023627.6E-26177271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEQEAAMVVF SCNSGSDGSS STTDSKQEEE EEELAAMEED ELIHVVQAAE LRLPSSTTAT  60
RPSSRYKGVV PQPNGRWGAQ IYERHARVWL GTFPDEEAAA RAYDVAALRF RGRDAVTNRA  120
PAAEGASAGE LAFLAAHSKA EVVDMLRKHT YDDELQQGLR RGSRAQPTPR WAREPLFEKA  180
VTPSDVGKLN RLVVPKQQAE RHFPFPLRRH SSDAAGKGVL LNFEDGDGKV WRFRYSYWNS  240
SQSYVLTKGW SRFVREKGLR PGDTVAFSRS AAAWGTEKHL LIDCKKMERN NLPTVDDDAR  300
VVVKLFGVDI AGDKTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4817429211122DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.272990.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172271810.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878463.10.0putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS70.0Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA2WKH50.0A2WKH5_ORYSI; Uncharacterized protein
STRINGOS01T0140700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-95related to ABI3/VP1 2