PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002748-PA
Common NameOsI_00328
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family RAV
Protein Properties Length: 369aa    MW: 39652.9 Da    PI: 10.3025
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002748-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.3e-1368116155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  BGIOSGA002748-PA  68 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 116
                       78****9888.8*********......44*************************98 PP
2B395.14.6e-30183281186
                       EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                       f+k+ tpsdv+k++rlv+pk++ae+h                + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++
  BGIOSGA002748-PA 183 FEKAVTPSDVGKLNRLVVPKQHAEKHfplrraassdsasAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTI 275
                       89****************************99998888755566999********************************************** PP

                       EEEE-S CS
                B3  81 vFkldg 86 
                       vF+++ 
  BGIOSGA002748-PA 276 VFSRSA 281
                       **9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-1768124IPR016177DNA-binding domain
PfamPF008471.5E-868116IPR001471AP2/ERF domain
CDDcd000185.40E-1468124No hitNo description
PROSITE profilePS5103222.04969124IPR001471AP2/ERF domain
SMARTSM003809.2E-2469130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2169124IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.4E-39178298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-30180292IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-28181280No hitNo description
SMARTSM010191.7E-23183295IPR003340B3 DNA binding domain
PROSITE profilePS5086313.902183295IPR003340B3 DNA binding domain
PfamPF023621.8E-27183281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSKPAA  60
AAVAQQSSRY KGVVPQPNGR WGAQIYERHA RVWLGTFPDE EAAARAYDVA ALRYRGRDAA  120
TNFPGAAASA AELAFLAAHS KAEIVDMLRK HTYADELRQG LRRGRGMGAR AQPTPSWARE  180
PLFEKAVTPS DVGKLNRLVV PKQHAEKHFP LRRAASSDSA SAAATGKGVL LNFEDGEGKV  240
WRFRYSYWNS SQSYVLTKGW SRFVREKGLR AGDTIVFSRS AYGPDKLLFI DCKKNNAAVA  300
ATTTCAGDER PTTTTSGAEP RVVRLFGVDI AGGDCRKRER AVEMGQEAFL LKRQCVVHQR  360
TPVLGALLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4918029311115DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.272990.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172271810.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622259.10.0AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS00.0Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A0E0FG210.0A0A0E0FG21_ORYNI; Uncharacterized protein
TrEMBLA2WKH70.0A2WKH7_ORYSI; Uncharacterized protein
STRINGONIVA01G02990.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.14e-79RAV family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]