PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003032-PA
Common NameOsI_00960
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 357aa    MW: 37705 Da    PI: 4.3943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003032-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.5e-14132175855
               AP2   8 wdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +k g ++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  BGIOSGA003032-PA 132 K-RKAGGYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDTAAIQLRG 175
                       3.45899*******88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.414122183IPR001471AP2/ERF domain
CDDcd000181.02E-22129185No hitNo description
Gene3DG3DSA:3.30.730.102.9E-22131184IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-15131184IPR016177DNA-binding domain
SMARTSM003806.6E-22131189IPR001471AP2/ERF domain
PfamPF008479.3E-6132175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEEEGFVALK RTEHVEVTSL AVAVEATPSA KGGKGKVVVG GGGAGGGVGP TRVRVFCDDF  60
DATDSSSDED EEEEVTARRR VKRYVQEIRL QRAAAVAVPP VKVKGEEVFP AAVSAKMAEA  120
AKARVVLAPG RKRKAGGYAA EIRDPWRRVR VWLGTFDTAE EAAKVYDTAA IQLRGRDATT  180
NFNQSGDSAS LDVPPEVAER VPQPPGASKN ASPATSYDSG EESHAAAASP TSVLRSFPPS  240
AVVATAVTAN KKQPPPPPLV VRETDESVDV FGCSFSDDGG FAGELPPLYT DFDLLADFPE  300
PPLDFLSNLP VEPFSLAPFS GNNGSPDLHL DDAPSPAAAQ VDDFFQDITD LFQIPVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.319080.0callus| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329917260.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629650.10.0ethylene-responsive transcription factor CRF2
TrEMBLA2WM890.0A2WM89_ORYSI; Uncharacterized protein
STRINGONIVA01G10020.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-20cytokinin response factor 2