PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA003095-PA

Common Name

OsI_01067

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Nin-like

Protein Properties

Length: 866aa MW: 95244.7 Da PI: 6.4703

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA003095-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.7	1.1e-28	520	571	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ BGIOSGA003095-PA 520 AEKTISLDVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 571 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.473	510	591	IPR003035	RWP-RK domain
Pfam	PF02042	5.9E-26	523	571	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.13E-21	762	857	No hit	No description
Pfam	PF00564	1.6E-15	772	853	IPR000270	PB1 domain
SMART	SM00666	7.4E-25	772	854	IPR000270	PB1 domain
PROSITE profile	PS51745	18.698	772	854	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.8E-25	772	853	No hit	No description
CDD	cd06407	1.45E-33	773	853	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence Send to blast
MGAPAAPATA PPAEAAAVVE EVHRTRSGNS DTTSKRVDQI NSKWQFHLSI DDNTDSSCLF 60 KERLTQALRY FKESTDQHLL VQVWAPVKSG DRYVLTTSGQ PFVLDQQSIG LLQYRAVSMM 120 YMFSVDGENA GELGLPGRVY KQKVPEWTPN VQYYSSTEYP RLNHAISYNV HGTVALPVFD 180 PSVQNCIAVV ELIMTSKKIN YAGEVDKVCK ALEAVNLKST EILDHPNVQI CNEGRQSALV 240 EILEILTVVC EEHKLPLAQT WVPCKYRSVL AHGGGVKKSC LSFDGSCMGE VCMSTSDVAF 300 HVIDAHMWGF RDACVEHHLQ KGQGVSGKAF IYRRPCFSKD ISQFCKLEYP LVHYARMFGL 360 AGCFAICLQS MYTGDDDYIL EFFLPPNCRN EDDQNALLES ILARMKKCLR TLKVVGNGDT 420 NEVCLQISNV LIIETEDLKT NVHFENSEGC FRESPESNGS QRAHEVDNDG NKISIMSERH 480 LLADDNSQNN GASVGRPNGS GASDSLHKSN KPPERRRGKA EKTISLDVLQ QYFSGSLKNA 540 AKSLGVCPTT MKRICRQHGI SRWPSRKINK VNRSLSKLKQ VIESVQGSDA SFNLTSITGP 600 LPIPVGPSSD SQNLEKASPN KVAELSNLAV EGDRDSSLQK PIENDNLAIL MSQQGFIDAN 660 NNLQLEADKA SHSRSSSGEG SINSRTSEAS CQGSPANQTF VCKPIASTFA EPQLIPEAFT 720 KEPFQEPALP LSRMLIEDSG SSKDLKNLFT SAVDQPFLAR SSNLALMQNS GTVTIKASFK 780 EDIVRFRFPC SGSVTALKDE VAKRLRMDVG MFDIKYLDDD HEWVKLACNA DLEECMEISR 840 HSGSHVIRLL VSDVAAHLGS SCGSSG

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence Send to blast

MGAPAAPATA PPAEAAAVVE EVHRTRSGNS DTTSKRVDQI NSKWQFHLSI DDNTDSSCLF  60
KERLTQALRY FKESTDQHLL VQVWAPVKSG DRYVLTTSGQ PFVLDQQSIG LLQYRAVSMM  120
YMFSVDGENA GELGLPGRVY KQKVPEWTPN VQYYSSTEYP RLNHAISYNV HGTVALPVFD  180
PSVQNCIAVV ELIMTSKKIN YAGEVDKVCK ALEAVNLKST EILDHPNVQI CNEGRQSALV  240
EILEILTVVC EEHKLPLAQT WVPCKYRSVL AHGGGVKKSC LSFDGSCMGE VCMSTSDVAF  300
HVIDAHMWGF RDACVEHHLQ KGQGVSGKAF IYRRPCFSKD ISQFCKLEYP LVHYARMFGL  360
AGCFAICLQS MYTGDDDYIL EFFLPPNCRN EDDQNALLES ILARMKKCLR TLKVVGNGDT  420
NEVCLQISNV LIIETEDLKT NVHFENSEGC FRESPESNGS QRAHEVDNDG NKISIMSERH  480
LLADDNSQNN GASVGRPNGS GASDSLHKSN KPPERRRGKA EKTISLDVLQ QYFSGSLKNA  540
AKSLGVCPTT MKRICRQHGI SRWPSRKINK VNRSLSKLKQ VIESVQGSDA SFNLTSITGP  600
LPIPVGPSSD SQNLEKASPN KVAELSNLAV EGDRDSSLQK PIENDNLAIL MSQQGFIDAN  660
NNLQLEADKA SHSRSSSGEG SINSRTSEAS CQGSPANQTF VCKPIASTFA EPQLIPEAFT  720
KEPFQEPALP LSRMLIEDSG SSKDLKNLFT SAVDQPFLAR SSNLALMQNS GTVTIKASFK  780
EDIVRFRFPC SGSVTALKDE VAKRLRMDVG MFDIKYLDDD HEWVKLACNA DLEECMEISR  840
HSGSHVIRLL VSDVAAHLGS SCGSSG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.3838	0.0	callus\| flower\| leaf\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115435543	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067319	0.0	AK067319.1 Oryza sativa Japonica Group cDNA clone:J013106K21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613020.1	0.0	protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A2WMJ9	0.0	A2WMJ9_ORYSI; Uncharacterized protein
STRING	OBART01G08660.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7