PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003252-PA
Common NameOsI_01385
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Dof
Protein Properties Length: 491aa    MW: 52809.4 Da    PI: 7.0259
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003252-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.41.5e-38111171262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++s
  BGIOSGA003252-PA 111 PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHVS 171
                       7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-31108168IPR003851Zinc finger, Dof-type
PfamPF027012.4E-31113169IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.602115169IPR003851Zinc finger, Dof-type
PROSITE patternPS013610117153IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MAALRQGDDP AIKLFGRTIP LLLDPAAAAA AAAADEVMPN LGNGVKTNND LPLVSDKLLI  60
VKGIPFCPNN SKKNDLQGIS RPDGRIEIDS MTEDVKTEPD GSVPEKILKK PDKILPCPRC  120
NSMETKFCYF NNYNVHQPRH FCRNCQRYWT AGGAMRNVPV GAGRRRNKHV SKYCQAMMTC  180
NNTVAPGDVS DVVHHQVITH GSSLLPATLK ENETPTEFIS EVPPCKSSAS ILDIGEPNDT  240
DLVPLASGDN KEEKSCASSV VVSSCSENLM PDNAIMKEPN NRSGCCNGVA LPFPTGPALV  300
LPWSLGWNSV ALMPATQCSM QPVLGLKDGI PCPPSWPPQL MVPAPGICTP VVPIPLVPPL  360
WSCFPGWPNG MWNAQCPGGN TTVLPSTAPN KISCSGSSSL VLGKHSREES LQEEEKTRNY  420
LWVPKTLRID DPAEAAKSSI WATLGIKPDD KGIFKSFQPN VAKNGTAPES PQALQANPAA  480
FSRSQSFQET T
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.888780.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329770020.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0669840.0AK066984.1 Oryza sativa Japonica Group cDNA clone:J013091E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635234.10.0cyclic dof factor 2
TrEMBLB8ACJ10.0B8ACJ1_ORYSI; Uncharacterized protein
STRINGOGLUM01G12710.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-62cycling DOF factor 2