PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003304-PA
Common NameOsI_01468
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 277aa    MW: 30116.6 Da    PI: 8.3579
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003304-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.7e-181050242
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      ri n+  r  tf kRr g+lKKA+EL +LCd++++++++++
  BGIOSGA003304-PA 10 RIANDATRRATFKKRRRGLLKKASELATLCDVDACLVVYGE 50
                      899************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.105150IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-23160IPR002100Transcription factor, MADS-box
CDDcd002661.58E-34285No hitNo description
SuperFamilySSF554551.23E-24392IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-12323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-181050IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MARKKIVLDR IANDATRRAT FKKRRRGLLK KASELATLCD VDACLVVYGE GDAEPEVWPS  60
TEVAMNVLRQ FRALPEMEQC KKMMNQEDFL RLRIGKLKEQ LRKMDRDNHE RETLILLHDA  120
LQGRLGTYES LSVEQLTSVD CLASARLKVI TDRLVEIRAP NEDGQVLVPP PPPPPPALPA  180
PPPPPAPMLP LAPPPTHVTP AMPLSSMPPP AFHGMNHHHH QNHFINHGGN DQNAWLMNVA  240
RNGGDLGALV YSAFASSSSS NTGGAGTSAA GAAAPGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIVLDRIANDATRRATFKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878343.10.0agamous-like MADS-box protein AGL80
TrEMBLA2WNN80.0A2WNN8_ORYSI; Uncharacterized protein
STRINGORUFI01G13020.10.0(Oryza rufipogon)
STRINGONIVA01G14280.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-26AGAMOUS-like 80