PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA003442-PA

Common Name

OsI_01761

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 143aa MW: 15523.8 Da PI: 6.1188

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA003442-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.8	7.8e-10	4	27	16	39
HHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 16 RrngilKKAeELSvLCdaevavii 39 R+++++K A+ELSvLCd+ va++ BGIOSGA003442-PA 4 RKETVIKMAKELSVLCDVPVALVC 27 *********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.321	1	26	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-6	4	27	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.76E-9	4	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MAGRKETVIK MAKELSVLCD VPVALVCAVG GAVEVWESEE GVLDRYRALP PEVRATRAHT 60 HRGYLERELR ARRAKLAKVR EEGAFKSWGR DALSGIITAE EAPALLESID AAIAAATARQ 120 EALALLDGGG LHLQHEVFCD FFG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003331	0.0	AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150161.1	7e-27	uncharacterized protein LOC109735358
Refseq	XP_020165744.1	1e-26	uncharacterized protein LOC109751255
Refseq	XP_020165750.1	1e-26	uncharacterized protein LOC109751255
TrEMBL	B8A7H3	6e-97	B8A7H3_ORYSI; Uncharacterized protein
STRING	OGLUM01G15980.1	5e-87	(Oryza glumipatula)
STRING	ORUFI01G15820.1	5e-87	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15069	11	20