PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA003443-PA

Common Name

OsI_01762

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 237aa MW: 24685.8 Da PI: 5.3325

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA003443-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	25.3	2e-08	6	39	10	43
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsst 43 t+ k ++ ++ A ELS+LC+++va++ ++ BGIOSGA003443-PA 6 DATYGKMQESLMEEARELSILCGVDVALLCAGGP 39 57999************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.503	1	34	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.16E-7	6	40	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.6E-7	7	37	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MKMEEDATYG KMQESLMEEA RELSILCGVD VALLCAGGPG TGDGDGSGAV STAEVAVWES 60 EEGVLASYRA ILPRPEAHTL RECLELKLAR MGPSSPWCGS AAISACTCGM TRRALPTPSL 120 CLSSAMYVGS SGGGGNQPQT TPAGDDINYS DDQSFSRNAA VAAAATTTHE PTAAVSPRRL 180 SPSPPELALT SPTRPTASSP WTSVAASSSR RLLGAVLGRW VPARGRQPWP TSIRYIT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A2WPI4	1e-168	A2WPI4_ORYSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23165	5	5