PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003453-PA
Common NameOsI_01791
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 194aa    MW: 21420.1 Da    PI: 9.8754
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003453-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-192155135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++
  BGIOSGA003453-PA 21 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 55
                      ********************************986 PP
2GATA26.21.1e-081011181835
              GATA  18 gnktLCnaCGlyyrkkgl 35 
                        +++LCnaCG++yrkk++
  BGIOSGA003453-PA 101 NHRSLCNACGIRYRKKRR 118
                       6899***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.8481551IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-151565IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-131855No hitNo description
Gene3DG3DSA:3.30.50.107.3E-161956IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.49E-132056No hitNo description
PROSITE patternPS0034402146IPR000679Zinc finger, GATA-type
PfamPF003203.0E-172155IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-5100119IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.5E-6101118IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGSTDRKVVG IGVAEEGRRS CVECRATTTP MWRSGPTGPR SLCNACGIRY RKKRRQDLGL  60
DLNQPQKQEH GEDPYDQRAD VAQGSKSRIP TDTSKIQHLQ NHRSLCNACG IRYRKKRRQD  120
LGLDLNQPQK QEHGEVIPEV KDSNSNSNNC NSGSGNSSSN LQVVPKRRLL MGVEEAALLL  180
MTLSSPSAST LLHG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.212391e-156callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166396651e-156
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1324001e-154BT132400.1 Oryza sativa clone RRlibD00393 mRNA sequence.
GenBankCT8296261e-154CT829626.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA214F08, full insert sequence.
GenBankCT8415701e-154CT841570.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102C07, full insert sequence.
GenBankCU4066001e-154CU406600.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103I12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621366.18e-47GATA transcription factor 23
TrEMBLA2WPK91e-140A2WPK9_ORYSI; Uncharacterized protein
STRINGOGLUM01G16180.13e-46(Oryza glumipatula)
STRINGORUFI01G16060.13e-46(Oryza rufipogon)
STRINGOS01T0343300-013e-46(Oryza sativa)
STRINGONIVA04G04160.13e-46(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-17GATA transcription factor 23