PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003560-PA
Common NameOsI_02007
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 248aa    MW: 27284.4 Da    PI: 8.0009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003560-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM317.1e-10592033128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev..ikev.diykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknra.......tks 80 
                        Gf+  Pt +elv ++L+++++g ++   +v  i    d   + P dL +    +++ + + e ++F++r++  + + r++ a        + 
  BGIOSGA003560-PA  59 TGFQDTPTVDELVLRHLRPRLRGFHCADGDVpvIGVRdDPAAAAPLDLVArhggAADRR-RgEAFYFVRRRRCRRPNVRRTVAeggggggGAG 150
                       69999*******************9766565424444699********74334322223.258899999988776555554445666665558 PP

               NAM  81 gyWka..tgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                       g Wk+  tg+ k+v++ +  + + k+   fy   +g + ++    Wv+ ey++
  BGIOSGA003560-PA 151 GLWKQswTGSGKSVTDLGVVVPWSKTCYCFYrrdEGGRLSTFGGGWVLAEYEI 203
                       99**54499*******888888999999***43333444445679******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.63457230IPR003441NAC domain
SuperFamilySSF1019412.22E-2458229IPR003441NAC domain
PfamPF023658.5E-859203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAICAAAADH SRASPSSAAT QPTTICWRPS KVKEEVEEDG MVVDPPDGAG EASDNLRATG  60
FQDTPTVDEL VLRHLRPRLR GFHCADGDVP VIGVRDDPAA AAPLDLVARH GGAADRRRGE  120
AFYFVRRRRC RRPNVRRTVA EGGGGGGGAG GLWKQSWTGS GKSVTDLGVV VPWSKTCYCF  180
YRRDEGGRLS TFGGGWVLAE YEITEPGTYR RADEEEDDDD YWVLCHVRKT ASNKRKRNRC  240
ERPWLHGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029680.0AP002968.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0416G11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637825.11e-143uncharacterized protein LOC107275546
TrEMBLA2WQ791e-180A2WQ79_ORYSI; Uncharacterized protein
STRINGONIVA01G18160.11e-179(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173721010