PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003621-PA
Common NameOsI_02146
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 294aa    MW: 34747.6 Da    PI: 8.6121
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003621-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.63.6e-1731113285
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                       fYn+YA + GFs+rks+ ++++  +e+++r  vCs++g+re+++ k +++ r+ r+ t++gCkakl++ k+  g+  vt +   H
  BGIOSGA003621-PA  31 FYNKYAWDKGFSIRKSYAERRNAAKEVKRRVIVCSRQGYRESKHVKrDNRIRKARNITHCGCKAKLVIAKQ--GHMSVTCFLRSH 113
                       ****************************************9998775788899****************99..777777777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-1631113IPR004330FAR1 DNA binding domain
PfamPF105511.3E-18224288IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEDTWISVEE LLEYQQIVSK TFNSEDEGIH FYNKYAWDKG FSIRKSYAER RNAAKEVKRR  60
VIVCSRQGYR ESKHVKRDNR IRKARNITHC GCKAKLVIAK QGHMSVTCFL RSHRVISDVQ  120
KEEIIEMEIA GVRKHHIMNI MEKQYGGYEN VGFIDTYLYN YYHRYKIETI VEGDAEIVLR  180
HLRAREERDP DFFFRFEADE DRHLKRLFWA DSQSRLDYEA FGDVVVFDST YRTNRYKLPF  240
IPFVGLNQHR STVVFGCGII AEETVKGYEW LLSTFLTAMS QKHPFGCICA NVGM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466791.21e-121protein FAR1-RELATED SEQUENCE 5
RefseqXP_021321074.11e-121protein FAR1-RELATED SEQUENCE 5
TrEMBLA2WQK90.0A2WQK9_ORYSI; Uncharacterized protein
STRINGSb01g014270.11e-120(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-48FAR1-related sequence 5