PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA003710-PA

Common Name

OsI_02327

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 182aa MW: 19055.8 Da PI: 9.7481

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA003710-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	7.8e-11	42	100	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +rk++NR++A+rsR+RK+++++eL+ v++L a N aL + e +a++++e+ BGIOSGA003710-PA 42 RKRKRKESNRLSAQRSRARKQQQLDELAGQVAALRARNGALGLPAREAARRCAAVRAEN 100 6789************************************9888888888888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-12	38	102	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-10	39	82	No hit	No description
PROSITE profile	PS50217	10.208	40	103	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-8	42	82	No hit	No description
Pfam	PF00170	2.2E-8	42	96	IPR004827	Basic-leucine zipper domain
CDD	cd14702	7.84E-16	43	82	No hit	No description
PROSITE pattern	PS00036	0	45	60	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MASPGVVCTT VTPTSSAGSD QVVAGGGEAA RRTVAPEVME ERKRKRKESN RLSAQRSRAR 60 KQQQLDELAG QVAALRARNG ALGLPAREAA RRCAAVRAEN ELLRARSVEL AARLDSLTDL 120 AQCLHDAAAA SSFAAAPPMM MAGAATAFPT GAVGAAAGFM MPQLPPPLLD ATTMGMHCNY 180 YY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	46	RKRKRK
2	41	47	RKRKRKE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.100718	3e-36	root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116638173	3e-36

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641337.1	1e-124	ocs element-binding factor 1
TrEMBL	A2WR40	1e-126	A2WR40_ORYSI; Uncharacterized protein
STRING	OGLUM01G22270.1	1e-123	(Oryza glumipatula)
STRING	OS01T0542700-01	1e-123	(Oryza sativa)
STRING	ONIVA01G21240.1	1e-123	(Oryza nivara)
STRING	OBART01G18790.1	1e-123	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13757	24	28