PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003851-PA
Common NameOsI_02595
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 247aa    MW: 26599.8 Da    PI: 7.6528
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003851-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-31137195159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY g Hnh+
  BGIOSGA003851-PA 137 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERARDDARFVVTTYDGVHNHP 195
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-33124197IPR003657WRKY domain
SuperFamilySSF1182903.53E-28130197IPR003657WRKY domain
PROSITE profilePS5081133.35132197IPR003657WRKY domain
SMARTSM007741.1E-36137196IPR003657WRKY domain
PfamPF031062.3E-24138195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSSLYPSLLS LSESPAEYRQ VGGGRYAGED VVVDDDDDMA AVADAVSSYL SFDMDDVEYY  60
TPEVGFHSKQ HNPPPVAAAP LEAGGGREQS RREAAVNLGK MDRGPAPVSG GAATGGVPRS  120
KNGSKIAFKT RSEVDVLDDG YRWRKYGKKM VKNSPNPRNY YRCSSEGCRV KKRVERARDD  180
ARFVVTTYDG VHNHPAPLHL RPQLPPPGGY SIAGAPAVVA PHGRLGLEEA EVIALFRGTT  240
ATSLLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-26127197777Probable WRKY transcription factor 4
2lex_A4e-26127197777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.306570.0callus| leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329937310.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8313670.0CT831367.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006O16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635031.11e-154WRKY transcription factor SUSIBA2
TrEMBLA2WRV61e-179A2WRV6_ORYSI; Uncharacterized protein
STRINGOS01T0584900-011e-153(Oryza sativa)
STRINGONIVA01G23410.11e-153(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.18e-38WRKY DNA-binding protein 50