PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003928-PA
Common NameOsI_02744
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 172aa    MW: 18601.8 Da    PI: 6.7964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003928-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.6e-13549347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +W++eE+ l++ + ++lG+g W+ I+r   ++Rt+ q+ s+ qk+
  BGIOSGA003928-PA  5 PWSEEEHRLFLVGLEKLGKGEWRGISRSYVTTRTPTQVASHAQKF 49
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.424154IPR017930Myb domain
SMARTSM007172.9E-8252IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-16355IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-9445IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-16453IPR006447Myb domain, plants
PfamPF002492.0E-10548IPR001005SANT/Myb domain
CDDcd001672.86E-9550No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTGVPWSEEE HRLFLVGLEK LGKGEWRGIS RSYVTTRTPT QVASHAQKFF LRQSSIGKKK  60
RRSSLFDMVP ICENGARVSE QLSGEGAAAA AAASTSLSLM NTHETSSDRV AAIDLNSTEE  120
DDTVGASGRP FFPVVLMEQQ QQASHGHGHH HHCTPLDLEL GMSVSSTPSI GT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.151380.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329886410.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615000.0AK061500.1 Oryza sativa Japonica Group cDNA clone:006-309-D10, full insert sequence.
GenBankAK1034320.0AK103432.1 Oryza sativa Japonica Group cDNA clone:J033128P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648805.11e-122transcription factor KUA1
TrEMBLA2WSA61e-124A2WSA6_ORYSI; Uncharacterized protein
STRINGORUFI01G24630.11e-121(Oryza rufipogon)
STRINGOS01T0603300-011e-121(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.19e-38MYB_related family protein