PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003931-PA
Common NameOsI_02748
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 303aa    MW: 31442.9 Da    PI: 7.3979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003931-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.63e-13136180347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +W++eE+ l++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  BGIOSGA003931-PA 136 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 180
                       8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.109.5E-4325IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.403129185IPR017930Myb domain
SuperFamilySSF466896.58E-17130186IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-17132184IPR006447Myb domain, plants
SMARTSM007178.5E-10133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-10133176IPR009057Homeodomain-like
CDDcd001672.49E-9136181No hitNo description
PfamPF002491.5E-10136179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCSS SASAGHRDTT MLCDGGDGGG GSGLRLFGVQ VHVAAGGGGG  60
GGGGGGGLPM KKSYSMDCLQ LAAAGAAPGS LVSPSSSSSS SMLLSIDEGG LERASNGYLS  120
DGPHGRIVQE RKKGVPWSEE EHRLFLVGLE KLGKGDWRGI SRSYVTTRTP TQVASHAQKF  180
FLRQSSIGKK KRRSSLFDMV PICENGARVS EQLSGEGEAA AAAASTSLSL MNTHETSSDR  240
VAAIDLNSTE EDDTVGSSGR PFFPVVLMEQ QQQASHGHGH HHHCTPLDLE LGMSVSSTPS  300
IGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.151380.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329886410.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034320.0AK103432.1 Oryza sativa Japonica Group cDNA clone:J033128P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648805.11e-175transcription factor KUA1
TrEMBLA2WSB00.0A2WSB0_ORYSI; Uncharacterized protein
STRINGONIVA01G25110.11e-175(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-45MYB_related family protein