PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004072-PA
Common NameOsI_03001
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 224aa    MW: 24988.9 Da    PI: 6.5145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004072-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.4e-171259148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++lv ++ q G g+W+  ar  g++R +k+c++rw++yl
  BGIOSGA004072-PA 12 KGPWTLEEDLILVSYISQNGEGSWDNLARSAGLNRNGKSCRLRWLNYL 59
                      79********************************************97 PP
2Myb_DNA-binding521.7e-1665108146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T+eEd  + +++ ++G++ W++Ia++++ gRt++++k++w++
  BGIOSGA004072-PA  65 RGSITPEEDMVIRELHSRWGNR-WSKIAKHLP-GRTDNEIKNYWRT 108
                       7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.347759IPR017930Myb domain
SuperFamilySSF466897.59E-3110106IPR009057Homeodomain-like
SMARTSM007174.2E-131161IPR001005SANT/Myb domain
PfamPF002491.1E-141259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-201365IPR009057Homeodomain-like
CDDcd001671.51E-91459No hitNo description
PROSITE profilePS5129424.3660114IPR017930Myb domain
SMARTSM007171.3E-1564112IPR001005SANT/Myb domain
PfamPF002494.9E-1565108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2466113IPR009057Homeodomain-like
CDDcd001674.20E-1269108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MCGRAGEPAV RKGPWTLEED LILVSYISQN GEGSWDNLAR SAGLNRNGKS CRLRWLNYLR  60
PGVRRGSITP EEDMVIRELH SRWGNRWSKI AKHLPGRTDN EIKNYWRTKI HRKPRGRSQL  120
LQEPCEDAMG MGMSTTTSEA ASTSASSGQS QASPGVWDEY MQASSFPHPE LVSFAADHHL  180
EMAGVGEVAA AAAAQFVPTE FGFNDGFWNF VDNFWETMPV SDVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-28811323127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.792240.0panicle| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642897.11e-168myb-related protein 305
TrEMBLA0A0E0MZS81e-167A0A0E0MZS8_ORYRU; Uncharacterized protein
TrEMBLA0A0P0V5Q11e-167A0A0P0V5Q1_ORYSJ; Os01g0637800 protein (Fragment)
TrEMBLB8ACC41e-167B8ACC4_ORYSI; Uncharacterized protein
TrEMBLQ5VNN21e-167Q5VNN2_ORYSJ; Myb-related protein 340-like
STRINGORUFI01G26910.11e-167(Oryza rufipogon)
STRINGOS01T0637800-001e-167(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-58myb domain protein 21