PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA004375-PA

Common Name

OsI_03575

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Protein Properties

Length: 703aa MW: 80516.3 Da PI: 5.9201

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA004375-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.8	2.6e-15	28	88	30	94
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++s + tl++++g++W v+l +k +g+++lt+GW +Fv++n L+e +f++F++d+++ f +v BGIOSGA004375-PA 28 LPSSAKGTLQNSEGKTWPVEL--EKLDGHVFLTTGWAKFVEDNSLREYEFLLFRYDDNMHF--MV 88 34677889***********..******************************998888..55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.506	1	94	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-6	4	94	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.1E-17	13	99	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.1E-12	16	87	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.6E-16	29	96	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.27E-13	35	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MALTAKEIPQ GFLIHIPEVD HSTFDASLPS SAKGTLQNSE GKTWPVELEK LDGHVFLTTG 60 WAKFVEDNSL REYEFLLFRY DDNMHFMVLP FGLNACEKVI RSSGSPQGKL PCDIFCCTKR 120 GRDGDRLTEA ANSLTPSHSQ VLQRTTQGHE LISPQSFPDQ HEVCGSKDGL DEHLSLNGPM 180 EDDKANAIAE VMSILDVDKV TVELFCAMLV FYKWNVDAVA EDFDICRGKP QIQNLFLKHK 240 LHFQFDIVKR KLRKFFPPDD YYSSPILESR KCSLEEPKLS NQPLQCDLTT EKCRLVDEHD 300 LCNFSQKKRR KRGSFCSPET PRRSPRLARQ NNSHDSAENT LKERSEERQP SPDSMIDQAE 360 SRSEQACLCH DKTDSGSLFQ DSKKVKPAHG EVDLCEEPQH NQGENEGNLD QVNNKETDEE 420 QIERNAVETS ESFTRRGCIK SSPASCEVPA CLRINELSLT WKPAEHVNPL EKVLLDIQRD 480 NFMKTISHVQ GIIRNHPSDL LTADVITVVV QKEIFKWNCC LKDRDAQRIV NALLEHARKI 540 KEMHNFNSEM RKEEFSAKLK VHLKWQLKEV ETIYTSLELD YKKATSDDNI AFSMLHDKKK 600 KLHNLQDEIT GLQQSLEMKK DEMQKLAHQV AEHESVFQKS LMERLRIKEV MKGYEQTLAE 660 VKVQLTSTEV GSIDIEALVK VEMDNMTKEI ELSKESLLNI TFH

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MALTAKEIPQ GFLIHIPEVD HSTFDASLPS SAKGTLQNSE GKTWPVELEK LDGHVFLTTG  60
WAKFVEDNSL REYEFLLFRY DDNMHFMVLP FGLNACEKVI RSSGSPQGKL PCDIFCCTKR  120
GRDGDRLTEA ANSLTPSHSQ VLQRTTQGHE LISPQSFPDQ HEVCGSKDGL DEHLSLNGPM  180
EDDKANAIAE VMSILDVDKV TVELFCAMLV FYKWNVDAVA EDFDICRGKP QIQNLFLKHK  240
LHFQFDIVKR KLRKFFPPDD YYSSPILESR KCSLEEPKLS NQPLQCDLTT EKCRLVDEHD  300
LCNFSQKKRR KRGSFCSPET PRRSPRLARQ NNSHDSAENT LKERSEERQP SPDSMIDQAE  360
SRSEQACLCH DKTDSGSLFQ DSKKVKPAHG EVDLCEEPQH NQGENEGNLD QVNNKETDEE  420
QIERNAVETS ESFTRRGCIK SSPASCEVPA CLRINELSLT WKPAEHVNPL EKVLLDIQRD  480
NFMKTISHVQ GIIRNHPSDL LTADVITVVV QKEIFKWNCC LKDRDAQRIV NALLEHARKI  540
KEMHNFNSEM RKEEFSAKLK VHLKWQLKEV ETIYTSLELD YKKATSDDNI AFSMLHDKKK  600
KLHNLQDEIT GLQQSLEMKK DEMQKLAHQV AEHESVFQKS LMERLRIKEV MKGYEQTLAE  660
VKVQLTSTEV GSIDIEALVK VEMDNMTKEI ELSKESLLNI TFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	310	KKRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.79254	0.0	root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	297597532	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK243092	0.0	AK243092.1 Oryza sativa Japonica Group cDNA, clone: J100023B20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614209.1	0.0	B3 domain-containing protein Os03g0120900
Swissprot	Q5JNA1	0.0	Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A2WUM3	0.0	A2WUM3_ORYSI; Uncharacterized protein
TrEMBL	A2ZXE3	0.0	A2ZXE3_ORYSJ; Uncharacterized protein
STRING	OS01T0723700-01	0.0	(Oryza sativa)
STRING	ONIVA01G33600.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13235	26	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16640.1	7e-12	B3 family protein