PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA004423-PA

Common Name

OsI_03666

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 225aa MW: 25010.2 Da PI: 6.4994

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA004423-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.2e-06	87	112	3	26
S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG..tCkyGdrCkFaHg 26 e+C++f+ C++G+ C+FaHg BGIOSGA004423-PA 87 GEPCPDFRVAAraACPRGSGCPFAHG 112 5899999999999************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.1E-4	83	114	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.037	84	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	119	149	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MAYETSSDHQ LAAAAEFLAA LQVHLAGAEA SSPTWGGRCA YDEDFMMYEF KVRRCPRSRA 60 HEWTSCPYAH PGEAARRRDP SHVTYTGEPC PDFRVAARAA CPRGSGCPFA HGTFETWLHP 120 SRYRTRPCRS GMLCARPVCF FAHNDKELRI VGDDAAAATP SPRSPFTTSE DSPPPSPMDM 180 RQIVLAMQQM DARKATRSVA PKTDMLQQEL EEDAPELGWV SDLLM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644032.1	1e-166	zinc finger CCCH domain-containing protein 10
Swissprot	Q94JI5	1e-167	C3H10_ORYSJ; Zinc finger CCCH domain-containing protein 10
TrEMBL	A0A0E0FSV0	1e-165	A0A0E0FSV0_ORYNI; Uncharacterized protein
TrEMBL	A2WUV8	1e-165	A2WUV8_ORYSI; Uncharacterized protein
STRING	ONIVA01G34550.1	1e-165	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11209	19	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	8e-45	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]