PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004540-PA
Common NameOsI_03926
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 260aa    MW: 28361.7 Da    PI: 5.6332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004540-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12131180455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        h +rEr RR+r+ ++++ L+ +lP+ a   +s K  K +i+  A +YI++L+
  BGIOSGA004540-PA 131 RHIMRERLRRERLSQGYADLQAILPTgA---SSSKGGKNTIVAAAANYIRELE 180
                       599***********************88...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014477.85E-53847No hitNo description
SuperFamilySSF474594.32E-14125196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.427127179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-10129196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-9131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-8133185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MENDDDVEHP FYYFVHDDAA AGVDDHEELL ASLGFLLPPP PPPPPPPQPD QGRSAFAAYQ  60
STAAMASSSS SSESLSRRYH SSASNVHRRM HRFLRSIYDD AGDDAGATAE MQPAEGEQQQ  120
AAPSGGSARF RHIMRERLRR ERLSQGYADL QAILPTGASS SKGGKNTIVA AAANYIRELE  180
GRKGWLCAQN ELLERTTPKP GAGMVVKVRA ESELGSTVDV FEAVLRRLKA MDELQVTAIQ  240
SWFGAGGMWM DVAVESKRVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032650.0AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635057.10.0transcription factor BHLH148-like
TrEMBLB8AA680.0B8AA68_ORYSI; Uncharacterized protein
STRINGORUFI01G35930.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432