PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004768-PA
Common NameOsI_04367
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 167aa    MW: 17302.3 Da    PI: 6.2295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004768-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000954365123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k+F++   L  H  +H
  BGIOSGA004768-PA 43 FECKTCSKRFPSFQALGGHRTSH 65
                      89**********99998888777 PP
2zf-C2H211.60.0008992114123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  Cg  Fs    L  H+r+H
  BGIOSGA004768-PA  92 HECAVCGVEFSMGQALGGHMRRH 114
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.69E-64067No hitNo description
PfamPF139123.5E-124265IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4294370IPR007087Zinc finger, C2H2
SMARTSM003550.184365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-690118No hitNo description
PfamPF139127.1E-1291116IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-491118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9992119IPR007087Zinc finger, C2H2
SMARTSM003550.8992114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MESLRVHASA LLSLSSPAAS ASQPTSSSST PAGRRALAAE GVFECKTCSK RFPSFQALGG  60
HRTSHTRLQA KLLSDPAAAA AAAAERDRAR VHECAVCGVE FSMGQALGGH MRRHRGETGT  120
TTVVLADADD SGGATVPQPP EPMPDLNYPP LEDAGDGSEP ELLNLLV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.104110.0panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8313980.0CT831398.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634661.11e-85zinc finger protein ZAT8
TrEMBLA0A0D9YH221e-116A0A0D9YH22_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FVK81e-116A0A0E0FVK8_ORYNI; Uncharacterized protein
TrEMBLA2WWT81e-116A2WWT8_ORYSI; Uncharacterized protein
TrEMBLI1NT571e-116I1NT57_ORYGL; Uncharacterized protein
STRINGOGLUM01G40530.11e-116(Oryza glumipatula)
STRINGONIVA01G41740.11e-116(Oryza nivara)
STRINGORGLA01G0304700.11e-116(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-24C2H2 family protein