PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004778-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 818aa    MW: 90485.9 Da    PI: 5.9598
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004778-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3872.2e-1184428112374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA+ v+++d + a++lL++++++a  +gd  qRla++f+++L+arla+++s++yk  + ++ +    +++l+a++l+  ++P+ k+s
  BGIOSGA004778-PA 442 ETLLIHCAQSVATDDRRSATELLKQIRQHAHANGDGDQRLAHCFANGLEARLAGTGSQIYKNYTITRLP---CTDVLKAYQLYLAACPFKKIS 531
                       789************************************************************999999...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       h  aNq+Il+ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+ L+++A++++vpfef++ +a+r
  BGIOSGA004778-PA 532 HYFANQTILNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGfrPAERTEETGRYLSDYAQTFNVPFEFQA-IASR 623
                       ****************************************************************************************.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +e++++e+L+++++E+l+Vn++++ ++l+desv  es+r+  Lk++++++P+v+++   + ++n++ F++rf eal +ysa+fd+le+++p++
  BGIOSGA004778-PA 624 FEAVRMEDLHIEEDEVLIVNCMFKFKNLMDESVVAESPRNMALKTIRKMNPHVFIHGVVNGSYNAPFFVTRFREALFHYSAIFDMLETNIPKD 716
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       +e+r  +E +l++re+ nv++ceg er er et+++W+ r +++GFk++pl+++++k a+  +r +++d + ++e++ +l++gWk+r L+++S
  BGIOSGA004778-PA 717 NEQRLLIESALFSREAINVISCEGLERMERPETYKQWQVRNQRVGFKQLPLNQDMMKRAREKVRCYHKD-FIIDEDNRWLLQGWKGRILFALS 808
                       *******************************************************************77.*********************** PP

              GRAS 372 aWr 374
                        W+
  BGIOSGA004778-PA 809 TWK 811
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.115415792IPR005202Transcription factor GRAS
PfamPF035147.7E-116442811IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MDAGVHDVCT MLPGSKRDAH LPLPIYPQIA AANGFATAEE FDPLLFLSPD AVCGGGGGDY  60
LNIVSAQPIS AASTNGASPP RDVSVSASAA SSAAAQHDDS EAFSDIVLGY INRMLMAEDI  120
DEKFEHYPVN ADDLLAAEKP FLEILADQSP YSGGSSVESP DGSSAANSCN SLSPCNCSSS  180
SDGLGAVPQT PVLEFPTTAF SQTPQLYGDL IPTGGMVESG GAWPYDPTEF YQLQTKPVRE  240
NLLSQSSSFA SSIGSSVTFS EGFESLLSPA GVLPDVSLND FVVQNQQALQ FRRGFQEASK  300
FLPDESKLVI DVDKLYSGDE GSRFLGEVRQ EKKLVKVKTE TSDVESAGHR GKKHFYGDDL  360
DAEEGRCSKH SAQGIDTDHL VRDLMDKVLL CNGETCSKGV KELREALQHD VAKHSGGGHG  420
KGSSHGKGRG KKQPKKEVVD LETLLIHCAQ SVATDDRRSA TELLKQIRQH AHANGDGDQR  480
LAHCFANGLE ARLAGTGSQI YKNYTITRLP CTDVLKAYQL YLAACPFKKI SHYFANQTIL  540
NAVEKAKKVH IVDYGIYYGF QWPCLIQRLS NRPGGPPKLR ITGIDTPQPG FRPAERTEET  600
GRYLSDYAQT FNVPFEFQAI ASRFEAVRME DLHIEEDEVL IVNCMFKFKN LMDESVVAES  660
PRNMALKTIR KMNPHVFIHG VVNGSYNAPF FVTRFREALF HYSAIFDMLE TNIPKDNEQR  720
LLIESALFSR EAINVISCEG LERMERPETY KQWQVRNQRV GFKQLPLNQD MMKRAREKVR  780
CYHKDFIIDE DNRWLLQGWK GRILFALSTW KPDNRSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-514458118375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.118660.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154409820.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619294.10.0scarecrow-like protein 9 isoform X1
TrEMBLA0A0E0IQD80.0A0A0E0IQD8_ORYNI; Uncharacterized protein
STRINGONIVA10G04710.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-176GRAS family protein