PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004786-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 219aa    MW: 22736.7 Da    PI: 4.9061
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004786-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.92.6e-29106159155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r++WtpeLH+rFveav++L G++ A+Pk+i++lm+v+gLt+e+v+SHLQkYRl
  BGIOSGA004786-PA 106 KARMVWTPELHHRFVEAVAHL-GEKGAVPKAIVRLMNVDGLTRENVASHLQKYRL 159
                       68*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-20103163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-29105163IPR009057Homeodomain-like
PROSITE profilePS5129411.768105162IPR017930Myb domain
TIGRFAMsTIGR015578.1E-25106159IPR006447Myb domain, plants
PfamPF002495.5E-10108158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVDAAAASGD ACGRVTEWET GLPAPGEMTP VSHQLVPPAL AAAFGIDLAA VGVLLPSPSV  60
DSPVSHLFFP VDEDDDEDEE GEGEGGNDDA PAAAAAGGGG GRCGKKARMV WTPELHHRFV  120
EAVAHLGEKG AVPKAIVRLM NVDGLTRENV ASHLQKYRLY LKRTRVAATP PPSPPPPPPP  180
PPPLPPAMYV PCFAAKPPLD AANRSDSPPS RTSDATTKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-27106162157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.100500.0callus| flower| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329766770.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666590.0AK066659.1 Oryza sativa Japonica Group cDNA clone:J013068K17, full insert sequence.
GenBankAP0032510.0AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878116.11e-156transcription factor PCL1-like
TrEMBLA0A0D9YH811e-156A0A0D9YH81_9ORYZ; Uncharacterized protein
STRINGOGLUM01G41000.11e-156(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.13e-29G2-like family protein