PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA004848-PA

Common Name

OsI_04529

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NAC

Protein Properties

Length: 256aa MW: 28275.5 Da PI: 5.1885

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA004848-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.8	2.8e-42	9	142	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka...eekewyfFskrdkkyatgkrknratksgyWka 85 +pGfrF Pt+eel+++yL++k++g + ++e+vi+ +d+y+v+P +L + + e + w++F++r++++a+g r++r+t sgyWka BGIOSGA004848-PA 9 APGFRFYPTEEELICFYLRNKLDGLRDDIERVIPVFDVYSVDPLQLSEihhemlG--GggeEGEPWFYFCPRQEREARGGRPSRTTPSGYWKA 99 59*************************99***********854555431..14335669************************ PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s++++ +g+kkt+vfy+grap+g+kt W m+eyr+ BGIOSGA004848-PA 100 AGTPGVVYSADRRPIGMKKTMVFYRGRAPSGTKTAWKMNEYRA 142 ***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	44.443	8	181	IPR003441	NAC domain
SuperFamily	SSF101941	4.71E-46	9	180	IPR003441	NAC domain
Pfam	PF02365	9.3E-24	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MADGGGRRAP GFRFYPTEEE LICFYLRNKL DGLRDDIERV IPVFDVYSVD PLQLSEIHHE 60 MLGGGGEEGE PWFYFCPRQE REARGGRPSR TTPSGYWKAA GTPGVVYSAD RRPIGMKKTM 120 VFYRGRAPSG TKTAWKMNEY RAFHYPDASS ASASSAGAAA PPNHLPPQLR SEFSLCRLYT 180 RSGGIRQFDR RPLAGGGDEN PGPSMAAAAA SPEENDGSGS SMQQLELMDQ GGAVDPDWDQ 240 WDDLATLTAL LYWPRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-27	10	141	19	141	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-27	10	141	19	141	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-27	10	141	19	141	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-27	10	141	19	141	NO APICAL MERISTEM PROTEIN
3swm_A	1e-27	10	144	22	147	NAC domain-containing protein 19
3swm_B	1e-27	10	144	22	147	NAC domain-containing protein 19
3swm_C	1e-27	10	144	22	147	NAC domain-containing protein 19
3swm_D	1e-27	10	144	22	147	NAC domain-containing protein 19
3swp_A	1e-27	10	144	22	147	NAC domain-containing protein 19
3swp_B	1e-27	10	144	22	147	NAC domain-containing protein 19
3swp_C	1e-27	10	144	22	147	NAC domain-containing protein 19
3swp_D	1e-27	10	144	22	147	NAC domain-containing protein 19
4dul_A	1e-27	10	141	19	141	NAC domain-containing protein 19
4dul_B	1e-27	10	141	19	141	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	0.0	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632691.1	0.0	NAC domain-containing protein 90 isoform X2
Swissprot	Q9FMR3	1e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D3EWL8	0.0	A0A0D3EWL8_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0N5E4	0.0	A0A0E0N5E4_ORYRU; Uncharacterized protein
TrEMBL	A2WX86	0.0	A2WX86_ORYSI; Uncharacterized protein
TrEMBL	I1NTL2	0.0	I1NTL2_ORYGL; Uncharacterized protein
TrEMBL	Q94CW0	0.0	Q94CW0_ORYSJ; NAC transcription factor-like protein
STRING	ORUFI01G41540.1	0.0	(Oryza rufipogon)
STRING	OS01T0862800-01	0.0	(Oryza sativa)
STRING	ORGLA01G0320200.1	0.0	(Oryza glaberrima)
STRING	OBART01G38190.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	9e-62	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]