PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004939-PA
Common NameOsI_04704
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 193aa    MW: 20037.3 Da    PI: 8.3318
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004939-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.4e-161969155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ a   l+g
  BGIOSGA004939-PA 19 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 69
                      78*****777.**********943...5*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-91969IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-162071IPR016177DNA-binding domain
SMARTSM003807.2E-252090IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-242085IPR001471AP2/ERF domain
PROSITE profilePS5103220.9292084IPR001471AP2/ERF domain
PRINTSPR003671.0E-82132IPR001471AP2/ERF domain
CDDcd000182.96E-132885No hitNo description
PRINTSPR003671.0E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSRAECGGGG GGGVEEERCR YRGVRRRRWG KWVSEIRVPG TRERLWLGSY ATPEAAAVAH  60
DTAVYFLRGG AGDGGGGGAT LNFPERAAAT YGGAAAVARL SPRSVQRVAS DAGMAADAQL  120
VAARDAAPAP APATAYARPD HCAGATTARH DELARRGMYG AHAHAAGANA RTSGERQLVC  180
AEEISVDDME ILM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-121084472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645971.12e-70ethylene-responsive transcription factor ERF015
TrEMBLA2WXQ21e-132A2WXQ2_ORYSI; Uncharacterized protein
STRINGONIVA01G44590.14e-76(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-23ERF family protein