PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA005090-PA

Common Name

OsI_05002

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NAC

Protein Properties

Length: 228aa MW: 24504.7 Da PI: 9.0865

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA005090-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.8	5.2e-33	21	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratk.sgyWkatgkdke 91 lp GfrF+Ptdeel+ +yL++kv +++l++ +vi+ +d+ +++PwdLp +++ e yfF+ +++ +g +ra g W+a+gk+k BGIOSGA005090-PA 21 LPIGFRFRPTDEELLLHYLRRKVMSRPLPA-DVIPVADLARLHPWDLP---GEGDGERYFFHLPATSCWrRGGGGSRAGGgGGAWRASGKEKL 109 699*************************.99***********...346778999998887776258888886443899***** PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 v++ +++ vg k+tLvf+ ++ g +tdW mheyrl BGIOSGA005090-PA 110 VVAPrcGKRPVGAKRTLVFF---RRGGARTDWAMHEYRL 145 99888999********...567889******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-45	15	167	IPR003441	NAC domain
PROSITE profile	PS51005	44.911	21	167	IPR003441	NAC domain
Pfam	PF02365	1.0E-20	22	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MAAEAASGGG GGYRMLPQAG LPIGFRFRPT DEELLLHYLR RKVMSRPLPA DVIPVADLAR 60 LHPWDLPGEG DGERYFFHLP ATSCWRRGGG GSRAGGGGGA WRASGKEKLV VAPRCGKRPV 120 GAKRTLVFFR RGGARTDWAM HEYRLLPADD HPPEANDVWV VCRVFKKTTT LAHRRSPPSI 180 RGAPRRRAAA ADDDDMPSSP SSCVTDGGDA GEEGEESSSC SVVASNCP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-27	16	170	12	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-27	16	170	12	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-27	16	170	12	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-27	16	170	12	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-27	16	170	15	171	NAC domain-containing protein 19
3swm_B	4e-27	16	170	15	171	NAC domain-containing protein 19
3swm_C	4e-27	16	170	15	171	NAC domain-containing protein 19
3swm_D	4e-27	16	170	15	171	NAC domain-containing protein 19
3swp_A	4e-27	16	170	15	171	NAC domain-containing protein 19
3swp_B	4e-27	16	170	15	171	NAC domain-containing protein 19
3swp_C	4e-27	16	170	15	171	NAC domain-containing protein 19
3swp_D	4e-27	16	170	15	171	NAC domain-containing protein 19
4dul_A	4e-27	16	170	12	168	NAC domain-containing protein 19
4dul_B	4e-27	16	170	12	168	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.14047	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem
Os.38120	0.0	callus\| flower\| leaf\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116639431	0.0
GEO	156765557	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269\|PubMed:20388856}.
Uniprot	TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067450	0.0	AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence.
GenBank	AK068446	0.0	AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence.
GenBank	AK288942	0.0	AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence.
GenBank	CT829591	0.0	CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence.
GenBank	CT829592	0.0	CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence.
GenBank	CU406744	0.0	CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence.
GenBank	GU120351	0.0	GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627804.1	1e-164	NAC domain-containing protein 83
Swissprot	Q9FY93	3e-38	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A0D9YJF5	1e-162	A0A0D9YJF5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0N711	1e-162	A0A0E0N711_ORYRU; Uncharacterized protein
TrEMBL	A2WYK0	1e-162	A2WYK0_ORYSI; Uncharacterized protein
TrEMBL	Q5JK15	1e-162	Q5JK15_ORYSJ; NAC4 protein
STRING	OGLUM01G46690.1	1e-163	(Oryza glumipatula)
STRING	ORUFI01G45830.1	1e-163	(Oryza rufipogon)
STRING	OS01T0925400-01	1e-163	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8233	30	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	4e-32	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]