PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA005319-PA

Common Name

OsI_09543

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 164aa MW: 17374.7 Da PI: 12.3366

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA005319-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.8	1.1e-39	31	134	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.... 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++ ++s + BGIOSGA005319-PA 31 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSNSTSNS-Ndlll 122 789*************************************************************99999888644444444444333.33555 PP TCP 89 ...........k 89 BGIOSGA005319-PA 123 praapfilgqaP 134 543333333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	37	91	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.6E-33	37	123	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MTTRPDGGGG GGGAPDKQLV PASNANGTAL AVRKPPSKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTSSPSSLR SNSTSNSNDL 120 LLPRAAPFIL GQAPPCRRRP HHFARARSRR HRPHPGLLGA PGQG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.51512	0.0	callus\| leaf\| panicle\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627477.1	2e-88	transcription factor TCP7
Swissprot	Q9FMX2	5e-48	TCP7_ARATH; Transcription factor TCP7
TrEMBL	B8AF71	1e-113	B8AF71_ORYSI; Uncharacterized protein
STRING	ORUFI02G39810.1	8e-88	(Oryza rufipogon)
STRING	OS02T0828566-01	8e-88	(Oryza sativa)
STRING	ONIVA02G40990.1	8e-88	(Oryza nivara)
STRING	ORGLA02G0333700.1	8e-88	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	2e-34	TCP family protein