PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005373-PA
Common NameOsI_09416
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 761aa    MW: 84419.5 Da    PI: 5.2194
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005373-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.92.6e-34606660155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr+rWtpeLHerFv+av++LGGsekAtPk++ ++mkv+gLt++hvkSHLQkYR+
  BGIOSGA005373-PA 606 KPRMRWTPELHERFVDAVNKLGGSEKATPKAVQKVMKVDGLTIYHVKSHLQKYRT 660
                       79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF111079.6E-4710220No hitNo description
PfamPF111071.6E-18227356No hitNo description
PROSITE profilePS5129411.819603667IPR017930Myb domain
SuperFamilySSF466891.08E-17604661IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-31605661IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25606660IPR006447Myb domain, plants
PfamPF002491.1E-10608659IPR001005SANT/Myb domain
PfamPF143793.8E-18678720IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MGWAHETVAM EELLGLVRGF VDVLVLAGGR TSSGAAATWR SGDVKKALQW ALFFEEVFKN  60
LRDDGQYDES ASELDAALVQ LASSPNFPKG IEDIRSKTLA MARELVVKHF LKTTNAENLG  120
AVLQAVVEMD MDGISASGEC NVCQEYVQSI LDMNLPSLMR TKNARDVGHS TSSDEFCEES  180
LFTGNSQILL KELQKKLDSG SCISLAEREL NTLLKSMKKD SFDSAGSTLC TSATAQKTQI  240
IDKFILWKQW KAKCLSYLLD ERTIRIMSGT NMIFNAPKEQ WMGLFEPLKV SADSSQSGII  300
EVMELCLLGL VARQWNSLIE SIMSHTFSSF PISKQYADLH QLLQGTTQDE CQDKLLGFKE  360
MDICEYARQS LESEPYILWL LPPVLTAAAM PPRSSLFKIY LVEIDKQLGE AASKDRKCNC  420
GGDGIDQHQN SSNFTSDLYI NKSESPNGKL SSESYAIDTS GCDSSLPPTQ SLYKGNPSSL  480
RMVYPKVSEQ NSWSQEPLPG PFVCPTSVDF FDQQDMTIFD QQIQDNIAAS PSTNLAKQNE  540
WFSSGTSLQY LESSVSAGSV LKAVDATSTT PSNYLHCHAQ RNTSNPPNFN EICSGNIASS  600
NIAATKPRMR WTPELHERFV DAVNKLGGSE KATPKAVQKV MKVDGLTIYH VKSHLQKYRT  660
VHHRPQLSDG RGMETTCEGL RVQIGLQKQL HEQLEIQRKL QLQVEEHSKY LAMIIEKQSE  720
SLRQLGALPR SLDAPTQVLD NRETCEGQTG DADSAEQKPE K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-27606664260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-27606664260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-27606664260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-27606664260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-27606664260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-27606664260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-27606664260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-27606664260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.523200.0callus| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329764000.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663820.0AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627299.10.0uncharacterized protein LOC4331121
RefseqXP_015627301.10.0uncharacterized protein LOC4331121
RefseqXP_015627302.10.0uncharacterized protein LOC4331121
RefseqXP_025878774.10.0uncharacterized protein LOC4331121
RefseqXP_025878775.10.0uncharacterized protein LOC4331121
TrEMBLB8AET20.0B8AET2_ORYSI; Uncharacterized protein
STRINGORUFI02G38560.30.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-44phosphate starvation response 1