PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005542-PA
Common NameOsI_09077
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 220aa    MW: 22820.1 Da    PI: 4.5569
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005542-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-183382255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  BGIOSGA005542-PA 33 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 82
                      6*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-303291IPR001471AP2/ERF domain
CDDcd000182.87E-173390No hitNo description
PfamPF008474.6E-113382IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-193391IPR016177DNA-binding domain
SMARTSM003802.7E-333396IPR001471AP2/ERF domain
PROSITE profilePS5103221.5753390IPR001471AP2/ERF domain
PRINTSPR003675.0E-93445IPR001471AP2/ERF domain
PRINTSPR003675.0E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVKSGQEAAP GSGGNAAAAA ARQGGGGGGR GRQYKGVRMR SWGSWVSEIR APNQKTRIWL  60
GSYSTAEAAA RAYDAALLCL KGSAADLNFP RVAAAAAANA TSPLQHHSGA ASFATATGGY  120
NPAAAPTTPP CSYGDMSSCS AVSSPETANY YGADHDMVAR EDDVDYAALA DIDAFFQSPK  180
CMDYSMMDPC STFFSPAPES LAAEWEDEGE ISLWSFSSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-143090263ATERF1
3gcc_A4e-143090263ATERF1
5wx9_A5e-142390372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878708.11e-120ethylene-responsive transcription factor ERF014
TrEMBLB8AJ481e-158B8AJ48_ORYSI; Uncharacterized protein
STRINGOS02T0767800-001e-119(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.16e-25ERF family protein