PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005602-PA
Common NameOsI_08981
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 331aa    MW: 34982.4 Da    PI: 4.9401
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005602-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171466148
                      TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WTteEde+l +++++ G g        ++Ia++++ gRt++++k++w+++l
  BGIOSGA005602-PA 14 KGPWTTEEDEKLMEYIQKNGHGswralpKLAAIAKHLP-GRTDNEIKNYWNTHL 66
                      79********************9999999999******.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.476970IPR017930Myb domain
SuperFamilySSF466891.79E-16976IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-241267IPR009057Homeodomain-like
SMARTSM007178.6E-151368IPR001005SANT/Myb domain
PfamPF002499.7E-161466IPR001005SANT/Myb domain
CDDcd001674.39E-151666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTTE EDEKLMEYIQ KNGHGSWRAL PKLAAIAKHL PGRTDNEIKN  60
YWNTHLKKDL IQKGIDPTTH RPRTDFFAAL PQLIALANLR QLVGQLPWDD PAAAAAGLQQ  120
AEAAQAAKFG QYLHLQALLQ PPPPSAATSP RSGCIGGAAA AMPGGDMEQM GAGLLSPPAM  180
SSAALSPMST SSLSPLPSPM SSTALSPLPP SSFFGNGGQG SFLAGQLPNI QMHGSSLFDQ  240
SAAIINDANH NQDYAASTGE REIINGATKT TTTTLLPEGS LPPLADYPTI SNLGDVYSTP  300
SCDGNITEFP LLPDALFDEL MRDYVSPSSS F
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.703540.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975999380.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623220.10.0transcription factor MYB41
TrEMBLB8AIT00.0B8AIT0_ORYSI; Uncharacterized protein
STRINGOMERI02G30660.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-50myb domain protein 93