PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005700-PA
Common NameOsI_08769
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YB
Protein Properties Length: 186aa    MW: 19720.1 Da    PI: 8.3928
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005700-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB136.11e-4229122396
             NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                       +++++lP+an++r+mkkvlP++aki+ +ak+++++c++ef++fv++eas+k+++e+r+t++++d+l ++++lGf++yv+p+++y++ yre+e+
  BGIOSGA005700-PA  29 ATNAELPMANLVRLMKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFER 121
                       68999**************************************************************************************98 PP

             NF-YB  96 e 96 
                       +
  BGIOSGA005700-PA 122 A 122
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-2529122IPR009072Histone-fold
PfamPF008081.3E-133292IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.19E-2333152IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAGNKKRGGR NMDQVEKAAV RSDGVGGSAT NAELPMANLV RLMKKVLPGK AKIGGAAKGL  60
THDCAVEFVG FVGDEASEKA KAEHRRTVAP EDYLGSFGDL GFDRYVDPMD AYIHGYREFE  120
RAGGNRRVAP PPPAAATPLT PGGPTFTDAE LQFLRSVIPS RSDDEYSGSS PAIGGYGYGY  180
GYGKNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-24341181397NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.575540.0flower| panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing kernels. {ECO:0000269|PubMed:11971906}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3002180.0AJ300218.1 Oryza sativa nf-yb1 gene and nf-YB1 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624776.11e-132nuclear transcription factor Y subunit B-1
SwissprotQ6Z3481e-133NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBLA0A0E0GCJ81e-132A0A0E0GCJ8_ORYNI; Uncharacterized protein
TrEMBLA2X9551e-132A2X955_ORYSI; Uncharacterized protein
STRINGONIVA02G34000.11e-133(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136592631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.17e-22nuclear factor Y, subunit B4