PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005769-PA
Common NameOsI_08626
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 229aa    MW: 23938 Da    PI: 4.7085
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005769-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer60.24.5e-19160200345
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaA 45 
                       ++rY+eClkNhAa++G+h++DGCgEfm+s+g+   aaal CaA
  BGIOSGA005769-PA 160 TWRYRECLKNHAARMGAHVLDGCGEFMSSPGDG--AAALACAA 200
                       689**************************8887..99*****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-15161200IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-10162189IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.5E-17162200IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.915163212IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEYKRSSHVE EEEEEEEEED DEEEDEEEQG HHQYTTVAAQ QQLHPQVLGS SASSPSSLMD  60
SAAFSRPLLP PNLSLVSPSA AAAAAPGGSY LHAAHHHGQG RRVEAPGGES QHQLQRHHEP  120
ARNGVLGGVA GAHAASTLAL VGGGGGGPRG GEGAAGEAPT WRYRECLKNH AARMGAHVLD  180
GCGEFMSSPG DGAAALACAA LCRVNDDMYL SANTRLGLEP FNFAFDAPS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.799780.0callus| leaf| panicle
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4804960.0AF480496.1 Oryza sativa clone BAC 49D11, complete sequence.
GenBankAP0053230.0AP005323.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0680A05.
GenBankAP0058440.0AP005844.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626824.11e-135zinc-finger homeodomain protein 7
SwissprotQ8S3Q91e-136ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLB8AHA01e-163B8AHA0_ORYSI; Uncharacterized protein
STRINGONIVA02G32300.11e-135(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-09zinc finger homeodomain 1