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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
BGIOSGA005839-PA |
| Common Name | OsI_08482 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
GRAS |
| Protein Properties |
Length: 618aa MW: 64196.4 Da PI: 9.1169 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA005839-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 302.9 | 7.5e-93 | 254 | 618 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
++lL e+A av++g++++a +lL+ l+ a+p+gd+ qRl+a+++ AL++r+ p+++ ++ s e+ aa +l+++vsP++ ++
BGIOSGA005839-PA 254 RQLLSEAAAAVADGNHTAAASLLSALKLSANPRGDAEQRLVAMMVAALSSRVGT--------GPSQHLADLYSGEHRAACQLLQDVSPCFGLA 338
689*************************************************98........5666666666899999*************** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlva 183
aN aIl+av+g++++H +Dfd+s +Q +aL++aLa+R+ ++ sl++T+v++p+s +++l +t erL+k+A++ g++f+f++ v+
BGIOSGA005839-PA 339 LHGANLAILDAVAGHRAIHFVDFDVSA-AQHVALIKALADRRVPATSLKVTVVADPTSPftpaMTQSLAATCERLKKLAQQAGIDFRFRA-VS 429
*************************85.8**************************9988899999*************************.78 PP
GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
r ++e ++L ++pgEalaVnl++ l r++desvs +++rde+L+ v+ l P+vv++veqe+++n+++ ++rf++a +y a+++sl+a+l+
BGIOSGA005839-PA 430 CRAPEIEASKLGCEPGEALAVNLAFTLSRVPDESVSPANPRDELLRRVRALGPRVVTLVEQELNTNTAPMAARFSDASAHYGAVLESLDATLG 522
99******************************************************************************************* PP
GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
r+s +r+ E++ l+ ++ n+v eg +r+er+e ++kWr+r+++aGF++v+++e++ +++ l + v+ ++g l gW++r +++
BGIOSGA005839-PA 523 RDSADRTRAEAA-LASKVANAVGREGPDRVERCEVFGKWRARFGMAGFRAVAIGEDIGGRVRARLGPAL-PAFDVKLDNGRLGVGWMGRVVTV 613
***********9.9***************************************************9998.66********************* PP
GRAS 370 vSaWr 374
+SaWr
BGIOSGA005839-PA 614 ASAWR 618
****8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 618 aa
Download sequence Send
to blast |
MDPAGAPWCD PRRGYGGYGV GSAALQAAAR QQSQQPRSDG AGGAGVTGGV LKRSLGEMER 60 WQQQRQVAAQ QAMYLRSVRQ RMDIGAVLGG AASSPAYGIS GLSSGFGGIS QQQPSSTMSS 120 LTTASRTVMS GMQQQRRMMA VPTAQNQAVA RAPAARPATA TELVLLQELE KQLLGDDEEA 180 DAAGSGCGSG ITSSDWGDTI QRLNSVTAAS SPSLPLPTAV NSTALLARSP TNSSSSTASS 240 SASSSPPISA ASSRQLLSEA AAAVADGNHT AAASLLSALK LSANPRGDAE QRLVAMMVAA 300 LSSRVGTGPS QHLADLYSGE HRAACQLLQD VSPCFGLALH GANLAILDAV AGHRAIHFVD 360 FDVSAAQHVA LIKALADRRV PATSLKVTVV ADPTSPFTPA MTQSLAATCE RLKKLAQQAG 420 IDFRFRAVSC RAPEIEASKL GCEPGEALAV NLAFTLSRVP DESVSPANPR DELLRRVRAL 480 GPRVVTLVEQ ELNTNTAPMA ARFSDASAHY GAVLESLDAT LGRDSADRTR AEAALASKVA 540 NAVGREGPDR VERCEVFGKW RARFGMAGFR AVAIGEDIGG RVRARLGPAL PAFDVKLDNG 600 RLGVGWMGRV VTVASAWR
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Os.49702 | 0.0 | callus| flower| leaf| panicle| root| seed |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |