PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006236-PA
Common NameOsI_07700
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 524aa    MW: 54812.1 Da    PI: 5.197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006236-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12325370555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR++i +++  L+el+P++      K +Ka++L + ++Y+k Lq
  BGIOSGA006236-PA 325 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 370
                       99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.04E-13318374No hitNo description
SuperFamilySSF474593.79E-17318381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.06320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17322380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9325370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MGGFAYPFTP SPAWSRHAVF AGSPWAAGGV SSLADALVSY GAVDDEEAAF LGKTAASSPS  60
TARLHEQQQL LLEAELLRHG DGLGFAAMDD DGDAAMLGAL EPCAMPLTDS GGPPVICSSS  120
SNDSSGSEHS AAMPAGGGFL VGEQQQHVPP AAYAAGGVLP SMAAGEETPQ SFGFGSLFNG  180
DLLQEANVSK YHHHQQQQQL GVVPSSQPHH LNDDIDFNTG KLMSFASGQQ HVTPSIDSLQ  240
IDQKEFSSGL HHLNLSSLIS GPLASFNATQ SHRQPAEACG GKNGGAAPFV NLSEVLPKGN  300
GSGSAGNGAP KPRVRARRGQ ATDPHSIAER LRREKISDRM KDLQELVPNS NKTNKASMLD  360
EIIDYVKFLQ LQVKVLSMSR LGAAEAVVPL LTETQTESPG FLLSPRSSSG ERQAGAGAVT  420
GGLPGDQPEL LDGGAMFEQE VVKLMEDNMT TAMQYLQSKG LCLMPVALAS AISAQKGTSS  480
AAVRPEKKKN GDGDGGGDEE DVKGEFDAPR RPPVGRPKEM RSRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.593030.0leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975994460.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419240.0AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623831.10.0transcription factor bHLH68
TrEMBLA2X6660.0A2X666_ORYSI; Uncharacterized protein
STRINGOS02T0564700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-56LJRHL1-like 3