PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006277-PA
Common NameOsI_07614
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 462aa    MW: 52216.6 Da    PI: 6.3479
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006277-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.42.1e-22105191290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e e+ +  +++ + ++trt+Cka+++ + +++g+w+v++l+++HnH+la
  BGIOSGA006277-PA 105 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGERLT--DANFNDPHTRTNCKAMVRFRVNNHGEWKVIRLVSDHNHNLA 191
                       7***************************************999877..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-19105191IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.446331369IPR007527Zinc finger, SWIM-type
PfamPF044344.9E-4342366IPR007527Zinc finger, SWIM-type
SMARTSM005750.0038344371IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MVNTDGEGGC EGGGGDPMCV DDNAIVAVET GVGVDQGIGS QHDDAGGDRV MEGQGAVTNS  60
GDEMGMRAYG DEAETEEAAT VHGSKEGTEE LLRKVVYSEE AAYKLYCDYG HRMGFSIRKG  120
KQSYFTGTKR IRTKDYFCSK EGLKEGERLT DANFNDPHTR TNCKAMVRFR VNNHGEWKVI  180
RLVSDHNHNL ARPEERHLLR SARSLIAGRS SSVETSKQDS LSCYISMART LAIGNADLQN  240
LVRHLKSRAN EDDWREKEID EDTRCSQKPP ACIIKHSDIL NHAAKVYTYR IYKLFETYFL  300
DGCGATKFKE LHCEDNNRYQ FEMTMQGRGS RVCTVHFDMM TMQLNCSCSK FETMGLLCPH  360
ALKALSIKNV CSIPETYILK RWTKGAKKCV FNPKQYESSY QECMDDEAAY CSHVMRYAYD  420
LVTKSQGNEE LRKSLWETLE SGEKELEKYL ENVTQYALSY AT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.115670.0callus| leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329880160.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626433.11e-168protein FAR1-RELATED SEQUENCE 5
TrEMBLB8AJD70.0B8AJD7_ORYSI; Uncharacterized protein
STRINGOMERI02G19070.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-16FAR1-related sequence 5